The two introns occupy exactly the same position and display an open reading frame in phase with the preceding exon at the 5. Papa s, chance b, ernster l eds cytochrome systems. The 464bp fragment of cytochrome b cyt b gene was amplified using primers. The universal primers of l14724 and h15149 were used to amplify part of the cytochrome b gene from the nineteen animal species listed in table 1. The cytochrome b gene of mtdna was used to distinguish different types of meat. Evolution of the cytochromeb gene of mammals article pdf available in journal of molecular evolution 322. Their aminoacid sequences are extremely diverse, with levels of identity as low as 16% in some cases. The oligomer dpttagcagaaccgg is complementary to a region near the n terminal coding region of the yeast cycl gene. Diagnostic polymorphisms in the mitochondrial cytochrome b. Cytochrome p4501a1 is a substrateinducible microsomal enzyme that oxygenates polycyclic aromatic hydrocarbons, such as the carcinogen benzoapyrene, as the initial step in their metabolic processing to watersoluble derivatives.
To confirm species authenticity, the cytochrome b gene regions were also amplified and sequenced using the published. Myopathy related to cytochrome b mim 516020 deficiency l is characterized by progressive exercise intolerance, proximal limb weakness, and in some cases episodes of myoglobinuria. Better resolution for cytochrome b than cytochrome c. Interspeciesspecific dna sequence polymorphisms in the mitochondrial cytochrome b gene were. Identification of coding region polymorphism in addition to the hypervariable regions is helpful to increase the value of mitochondrial dna polymorphic data in forensic genetics. For the design of the pcr primers, two complete mitochondrial genomic libraries were first. The present study aims to test the effectiveness of mitochondrial cytochrome c oxidase subunit i coi gene and cytochrome b cytb gene for discriminating the schizothorax fish. Two highly conserved residues predicted to be near the cytoplasmic surface of putative transmembrane helices b and c. The evolution of primate malaria parasites based on the. Nucleotide variation of the mitochondrial cytochrome b. The mitochondrial cytochrome b cytb gene is widely used in systematic studies to resolve divergences at many taxonomic levels.
From ncbi gene this gene encodes a small heme protein that functions as a central component of the electron transport chain in mitochondria. Geographic variation and diversity of the cytochrome b. Molecular investigation of nonvolant endemic mammals. The mitochondrial mt cytochrome b gene has been used to study the evolution and phylogenetic relationships of many animals, such as birds, mammals, and fish 1, 5, 7, 8, 12, 20, 21,23, although the sequence of this gene has been determined for only six.
Adele damico, enrico bertini, in handbook of clinical neurology, 20. The segment including the complete cyt b gene was amplified by a pcr with the primer pair. Cytochrome b gene for species identification of the. Relationship of baleen whales established by cytochrome b. Cytochrome p450 proteins, named for the absorption band at 450 nm of their carbonmonoxidebound form, are one of the largest superfamilies of enzyme proteins. Cytochrome bb6 is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. Maximum parsimony, neighbor joining, maximum likelihood and minimum evolution methods were used to construct phylogenetic trees. A partial dna sequence of cytochrome b gene was used to identify the remains of endangered animals and species endemic to taiwan. This study presents an analysis of the phylogenetic relationship between several species in the tetragonula genus based on the sequences of the cytochrome b gene. However, knowledge about the number of species to be recognized and their exact geographical distributions is still limited. Google has not performed a legal analysis and makes no. Next, eare transfered by an electron transport chain to the fes center to pc, and the semiquinone follows by transferring its eto the heme bp of the. Estimation of phylogenetic relationships among japanese. Neighborjoining phylogenies for woodpeckers based on a.
Identification and isolation of the yeast cytochrome c gene. Cytochrome b phylogeny and the taxonomy of great apes and. Cytochrome p450 aromatic odemethylase, which is made of two distinct promiscuous parts. A new primer set for amplification of the cytochrome b gene in. In this study, dna sequence of the mitochondrial cytochrome b gene was analysed among unrelated ethnic malays as an initial effort to determine the sequence variation within the cytochrome b gene of mtdna coding region. A time step pcr protocol was used to demonstrate the potential of this primer set for quantification of this species.
The sequence of the 251base pairs, which cover approximately 22% of the cytochrome b gene, was determined by pcrdirect sequencing method. The p450 genes also called cyp are found in the genomes of virtually all organisms, but their number has exploded in plants. The mitochondrial cyt b gene amplified with the developed primers can be recommended as an informative. The pcr produced a single amplification product for each genomic template. The present study focuses mainly on the utility of cyt b as a molecular marker for inferring phylogenetic relationship at various levels within the fish family cichlidae. Analysis of the 396bp nucleotide sequence, corresponding to positions 445 to 840 in the candida glabrata cytochrome b coding sequence 2, 25, indicated substitutions at only three positions fig. The mitochondrial cytochrome b cyt b gene is widely used in systematic studies to resolve divergences at many taxonomic levels. One of the primer sets designed was shown to be highly specific for p. Distinguishing extant elephants ivory from mammoth ivory. Background fibromyalgia fm is a worldwide diffuse musculoskeletal chronic pain condition that affects up to 5% of the general population.
Comparative evolution of the mitochondrial cytochrome b gene and. Phylogeny and distribution of crested gibbons genus. As an alternative to direct dna sequencing of pcr products, random pcrrflp is an efficient technique to discriminate between species. Spanning the fulllength k gene, seven nonsynonymous single nucleotide polymorphisms snps were found k189n, k189t, e208k, d281v, e401q, r622i and t535m, of which none have been associated with artemisinin resistance. Relationship of baleen whales established by cytochrome b gene sequence comparison. A total of 78 taxa were used in the present analysis, representing all the major groups in the. The comparison included 28 sequences, representing 22 families and 10 orders. Moreover, molecular phylogenetic relationships were assessed using cyt b gene sequences obtained by this study and download from the. The ptz57rt plasmids were digested with ecori enzyme to execute ligated cytochrome b gene. Each of the mutations in the mtcyb gene impairs the. Enzyme induction reflects increased transcription of the cognate gene.
We analyzed the cyt b sequence and then analyzed a combined data set of cyt b along with a previous data set of cytochrome oxidase subunit ii coii sequence. The three species in parentheses were not included in the cyt b analysis. Jci human neutrophil cytochrome b light chain p22phox. Of several yeast eco ri fragments which hybridize to this probe, one is changed in size by a g t mutation which. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petb and petd genes. The conservation of animals species included in this study were. Comparative evolution of the mitochondrial cytochrome b. Cytochrome b is one of 11 components of a group of proteins called complex iii.
Molecular phylogeny of the chipmunks inferred from. Badshah2 1department of livestock production, university of veterinary and animal sciences, lahorepakistan 2institute of biochemistry and biotechnology. The iso1cytochrome c gene of yeast has been identified and cloned using a synthetic oligodeoxynucleotide as a hybridization probe. Four conserved histidine residues are postulated to be the ligands. This protein plays a key role in structures called mitochondria, which convert the energy from food into a form that cells can use. The mitochondrial dna sequence of cytochrome b gene in a thoroughbred horse was determined. Phylogenetic relationships were analyzed by upgma, neighborjoining, maximumlikelihood, and maximum parsimony analyses. Mitochondrial cytochrome b was isolated from the dinoflagellate pfiesteria piscicida, and the utility of the gene for species identification was examined. Many symptoms associated with mitochondrial diseases are reported in patients with fm such as exercise intolerance, fatigue, myopathy and mitochondrial dysfunction. Pdf the cytochrome b gene as a phylogenetic marker. The results showed that the similarities of all specimens were not less than 99.
Pcr amplification of partial cytochrome b gene with universal primers. Dna extraction and amplification of the cytochrome b gene. The present study focuses mainly on the utility of cytb as a molecular marker for inferring phylogenetic relationship at various levels within the fish family cichlidae. The mtcyb gene provides instructions for making a protein called cytochrome b.
Cytochrome bb6 noncovalently binds two heme groups, known as b562 and b566. Pdf shortcomings of the cytochrome b gene as a molecular marker. The environmental toxicant 2,3,7,8tetrachlorodibenzopdioxin is the most potent known. Detection and quantification of pfiesteria piscicida by.
The encoded protein associates with the inner membrane of the mitochondrion where it accepts electrons from cytochrome b and transfers them to the cytochrome oxidase complex. Structural biochemistrycytochrome b6f complex wikibooks. We report a phylogenetic analysis of primate malaria parasites based on the gene encoding the cytochrome b protein from the mitochondrial genome. In our analysis, four species were used for rooting the plasmodium phylogenetic tree. Use of cytochrome b gene variability in detecting meat species by multiplex pcr assay. Cytochrome b gene based phylogenetic studies of pangshura.
Mutations in the cytochrome heavy chain gene, encoded by the cybb locus in xp21. We report the nucleotide sequences at the splicing junctions of intron i3 of the cytochrome b box long gene of the mitochondrion of saccharomyces cerevisiae and compare them with the homologous sequences in aspergillus nidulans. Phylogenetic analysis of tetragonula minangkabau and other. Mutation in cytochrome b gene of mitochondrial dna in a. However, cytb still is the most widely used gene for for phylogenetics and phylogeography in fishes because its. Leishmania cytochrome b gene sequence polymorphisms in. By comparing dna sequences between the thoroughbred and published sequence data two horses and one grevyi zebra, polymerase chain reaction pcr primers were designed for amplification of a 590 bp dna fragment in the cytochrome b gene, and pcr. This rare condition is related to mutations in the mtcyb gene. A total of 185 individuals of 11 species for coi gene and 264 individuals of 23 species for cytb gene were used for analyzing, respectively. Authority ep european patent office prior art keywords gene cytochrome p450 seq id flower sequence prior art date 19970303 legal status the legal status is an assumption and is not a legal conclusion. This chapter details a robust dna technique using part of the cytochrome b gene on the mitochondrial.
Pdf use of cytochrome b gene variability in detecting. Mitochondrial cytochrome b gene analysis of aspergillus. In this study, we report a mutation in cytochrome b gene of mitochondrial. In order to clarify the phylogenetic position of the takydromus sylvaticus, we investigated the phylogeny of 15 takydromus spp.
The mitochondrial cytochrome b gene is widely used in systematic studies to resolve divergences of many different ages. Typing of candida albicans isolates by sequence analysis. Mitochondrial cytochrome b cytb is among the most extensively sequenced genes to date across the vertebrates. The dugong order sirenia sequence associated with that of the elephant, supporting the. The heteroplasmy level of some mutations in gene mtcyb among women with asymptomatic atherosclerosis. Cytochrome p450 gene download pdf info publication number ep0863206b1.
Species identification of animal specimens by cytochrome b. Polymorphism of mtdna cytochrome b gene of local cattle in. The entire mitochondrial cytochrome b cyt b gene was compared for 11 species of the artiodactyl family cervidae, representing all living subfamilies, i. Dna extraction and amplification of cytochrome b gene.
Cloning of cytochrome b gene successful ligation of amplified and gel purified cyt b gene fragments was done and cloned into ptz57rt vector and subsequently transformed into xli blue. Here, we employ nearly 2,000 cytb gene sequences from genbank to calculate and compare levels of genetic distance between sister species, congeneric species, and confamilial genera within and across the major vertebrate taxonomic classes. Evolution of the mitochondrial dna control region and cytochrome. The pcr product was digested using hinfi and taqi restriction enzyme to identify the polymorphism of mtdna cytochrome b cytb gene.
The pcrrflpmethod is an inexpensive tool in forensic science, even if the template is degraded or contains only traces of dna from various species. Since the methaemoglobinaemia was suspected to have a familial background, the level of methb was determined in j. The dna sequences of the mitochondrial cytochromeb gene of marine mammals cetacea, pinnipedia, sirenia were compared with cytochromeb genes of terrestrial mammals including the semiaquatic hippopotamus. Cytochrome b is absent in two subgroups of chronic granulomatous disease cgd, an inherited disorder characterized by the lack of oxidase activity. Comparative evolution of the mitochondrial cytochrome b gene and nuclear. Cytochrome b cyt b gene complete sequences 1143bp of takydromus sylvaticus were sequenced. The partial cytochrome b gene sequence enabled accurate association of ivory samples with their species of origin for all three extant elephants.
Molecular investigation of nonvolant endemic mammals through mitochondrial cytochrome b gene from andaman and nicobar archipelago. The cytochrome b gene type and genotype rdna type of eachc. To further elucidate the evolutionary history of crested gibbon species and to settle their distribution ranges, we analyzed the complete mitochondrial cytochrome b gene from 79 crested gibbon individuals from known. Total dna was extracted from the caudal fin by proteinase k digestion, phenol.
493 1580 1172 551 663 96 647 110 648 194 867 40 1345 886 128 1108 79 1520 942 940 1281 1294 20 877 1143 1127 1128 485 360 1360 688